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Analysis tools - BLAST databases

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Basic Local Alignment Search Tool.

  - BLAST introduction
  - Run a BLAST search
  - blastall
  - BLAST-searchable databases
  - blastall formatting examples
  - creating BLAST databases (formatdb)
  - sequence filtering

Local BLAST databases available for searching

The databases listed below can be searched using BLAST on the command line. For example, to search all of the human gene translations provided by Ensembl (in the BLAST database called, "ensembl_human_pep"), you could use the following command line:

blastall -p blastp -d ensembl_human_pep -i myqueryseq.fasta -o blast.out


We provide access to the following BLAST databases for molbiol users on orac:


peptide databases:


FA1090_aa Last updated: Thu Feb 21 2008

FAM18_aa Last updated: Tue Mar 11 2008

MC58_aa Last updated: Wed Mar 12 2008

MSDB Last updated: Tue Sep  4 2007

Ngonorrhoeae_NCCP11945_aa Last updated: Thu Jan  8 2009

Nlactamica_ST640_aa Last updated: Thu Dec 18 2008

Nmeningitidis_053442_aa Last updated: Thu Jan  8 2009

Z2491_aa Last updated: Mon Mar 31 2008

Z2591_aa Last updated: Wed Mar 12 2008

decoy_maxquant-kr-TAIR9 Last updated: Fri Jan 22 2010

decoy_maxquant-kr-humanIPI3 Last updated: Fri Jan 15 2010

decoy_maxquant-kr-human_swissprot Last updated: Fri Feb 12 2010

decoy_maxquant-kr-ipi Last updated: Wed Feb 17 2010

decoy_maxquant-kr-mouse_swissprot Last updated: Fri Feb 12 2010

decoy_maxquant-kr-nr Last updated: Sun Feb 21 2010

decoy_maxquant-kr-sixmix Last updated: Fri Jun 19 2009

decoy_maxquant-kr-uniprot_sprot Last updated: Fri Feb 12 2010

ensembl_human_pep Last updated: Thu Jul 30 2009
Protein translations of Ensembl human gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Homo_sapiens

ensembl_mouse_pep Last updated: Mon Feb 15 2010
Protein translations of Ensembl mouse gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Mus_musculus

ensembl_xenopus_pep Last updated: Tue Feb 16 2010
Xenopus tropicalis genome proteins
www.Xenbase.org

ensembl_zebrafish_pep Last updated: Sun Feb 21 2010
Protein translations of Ensembl zebrafish gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Danio_rerio

env_nr Last updated: Wed Jul 15 2009
Protein translations of whole genome shotgun sequences from environmentally acquired samples
www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/sargasso.html

human_swissprot Last updated: Fri Apr 24 2009

mouse_swissprot Last updated: Fri Apr 24 2009

nr Last updated: Thu Feb 18 2010
Non-redundant, protein sequence database from the NCBI, derived from translations of entries in GenBank, EMBL, DDBJ and PDB
www.ncbi.nlm.nih.gov/

pataa Last updated: Thu Feb 11 2010
Protein sequences from the patent division of GenPept (originally from USPTO and EU/Japan Patent Agencies)
www.ncbi.nlm.nih.gov/

refseqp_fungi Last updated: Mon Feb  1 2010

refseqp_invertebrate Last updated: Mon Feb  1 2010

refseqp_microbial Last updated: Wed Feb  3 2010

refseqp_mitochondrion Last updated: Wed Feb  3 2010

refseqp_plant Last updated: Sun Jan 31 2010

refseqp_plasmid Last updated: Thu Feb  4 2010

refseqp_plastid Last updated: Mon Sep 18 2006

refseqp_protozoa Last updated: Thu Feb  4 2010

refseqp_vertebrate_mammalian Last updated: Tue Feb  2 2010

refseqp_vertebrate_other Last updated: Sat Jan 30 2010

refseqp_viral Last updated: Sun Jan 31 2010

uniprot_swissprot Last updated: Fri Feb 12 2010
The UniProtKB/Swiss-Prot Protein Knowledgebase is a curated protein sequence database that provides a high level of annotation, a minimal level of redundancy and a high level of integration with other databases.
www.ebi.ac.uk/swissprot/

uniprot_trembl Last updated: Wed Feb 17 2010
UniProtKB/TrEMBL contains the translations of all coding sequences (CDS) present in the EMBL/GenBank/DDBJ Nucleotide Sequence Databases and also protein sequences extracted from the literature or submitted to UniProtKB/Swiss-Prot.
www.ebi.ac.uk/trembl/

uniref100 Last updated: Thu Feb 11 2010
Non-redundant, curated protein sequence database based on UniProt. All identical sequences are clustered together and appear as a single entry
www.ebi.ac.uk/uniref/

uniref50 Last updated: Tue Feb 16 2010
Non-redundant, curated protein sequence database based on UniProt. Sequence identity cut-off set such that no pair of sequences has greater than 50% similarity
www.ebi.ac.uk/uniref/

uniref90 Last updated: Mon Feb 15 2010
Non-redundant, curated protein sequence database based on UniProt. Sequence identity cut-off set such that no pair of sequences has greater than 90% similarity
www.ebi.ac.uk/uniref/




nucleotide databases:


Athaliana Last updated: Tue Apr 29 2008

Athaliana_TAIR9_cdna Last updated: Fri Dec  4 2009

MC58 Last updated: Mon Feb 25 2008

Ngonorrhoeae_NCCP11945 Last updated: Thu Dec 18 2008

Nmeningitidis_053442 Last updated: Thu Dec 18 2008

Rhodobacter_sphaeroides_ATCC_17029 Last updated: Thu Mar 20 2008

Z2491 Last updated: Mon Feb 25 2008

ensembl_human_cdna Last updated: Tue Jan  5 2010
cDNA sequences corresponding to Ensembl human gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Homo_sapiens

ensembl_mouse_cdna Last updated: Thu Feb 18 2010
cDNA sequences corresponding to Ensembl mouse gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Mus_musculus

ensembl_xenopus_cdna Last updated: Sat Feb 20 2010
Xenopus tropicalis genome transcripts
www.Xenbase.org

ensembl_zebrafish_cdna Last updated: Wed Feb 17 2010
cDNA sequences corresponding to Ensembl zebrafish gene predictions (known, novel and pseudogene predictions only - not ab initio)
www.ensembl.org/Danio_rerio

env_nt Last updated: Tue Feb  2 2010
Whole genome shotgun sequencing of environmentally acquired samples
www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/sargasso.html

est_human Last updated: Sat Nov 10 2007

est_mouse Last updated: Fri Jan  1 2010

est_others Last updated: Wed Nov 18 2009

gbrowse_16p Last updated: Wed Mar 29 2006

gbrowse_mouse_alpha Last updated: Wed Nov 29 2006

neisseria_FA19_mapping_allcontigs Last updated: Tue Mar 11 2008

nt Last updated: Sat Feb  6 2010
Nucleotide sequence database entries from GenBank, EMBL, DDBJ and PDB. Note: not non-redundant
www.ncbi.nlm.nih.gov/

patnt Last updated: Thu Feb 11 2010
Nucleotide sequences from the patent division of GenBank (originally from USPTO and EU/Japan Patent Agencies)
www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/sargasso.html

refseqn_fungi Last updated: Mon Feb  1 2010

refseqn_invertebrate Last updated: Mon Feb  1 2010

refseqn_microbial Last updated: Wed Feb  3 2010

refseqn_mitochondrion Last updated: Wed Feb  3 2010

refseqn_plant Last updated: Sun Jan 31 2010

refseqn_plasmid Last updated: Thu Feb  4 2010

refseqn_protozoa Last updated: Thu Feb  4 2010

refseqn_vertebrate_mammalian Last updated: Sat Feb  6 2010

refseqn_vertebrate_other Last updated: Sat Jan 30 2010

refseqn_viral Last updated: Sun Jan 31 2010

rhodo Last updated: Tue Mar 18 2008

rrna_9_59 Last updated: Thu Mar 13 2008

sts Last updated: Mon Feb  8 2010
STS (sequence tag sites) division of GenBank, EMBL and DDBJ
www.ncbi.nlm.nih.gov/dbSTS




genome-related databases:


FA1090_genome Last updated: Thu Feb 21 2008

FAM18_genome Last updated: Tue Mar 11 2008

ens_mouse_NCBI34_genome Last updated: Wed Jan 31 2007

ens_mouse_masked_NCBI34_genome Last updated: Wed Jan 31 2007

ensembl_human_genome Last updated: Wed Jul 29 2009
The full sequence of the human genome assembly
www.ensembl.org/Homo_sapiens

ensembl_human_masked_genome Last updated: Wed Jul 29 2009
The full, repeat-masked sequence of the human genome assembly
www.ensembl.org/Homo_sapiens

ensembl_mouse_genome Last updated: Fri Feb 19 2010
The full sequence of the mouse genome assembly
www.ensembl.org/Mus_musculus

ensembl_mouse_masked_genome Last updated: Tue Feb 16 2010
The full, repeat-masked sequence of the mouse genome assembly
www.ensembl.org/Mus_musculus

ensembl_xenopus_genome Last updated: Thu Feb 18 2010
Xenopus tropicalis genome assembly
www.Xenbase.org

ensembl_xenopus_masked_genome Last updated: Tue Feb 16 2010
Repeat-masked Xenopus tropicalis genome assembly
www.Xenbase.org

ensembl_zebrafish_genome Last updated: Sun Feb 21 2010
The full sequence of the zebrafish genome assembly
www.ensembl.org/Danio_rerio

ensembl_zebrafish_masked_genome Last updated: Sun Feb 21 2010
The full, repeat-masked sequence of the zebrafish genome assembly
www.ensembl.org/Danio_rerio

ens_mouse_NCBI34_chr1 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr10 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr11 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr12 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr13 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr14 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr15 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr16 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr17 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr18 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr19 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr2 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr3 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr4 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr5 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr6 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr7 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr8 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chr9 Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chrMT Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chrX Last updated: Wed Jan 31 2007
ens_mouse_NCBI34_chrY Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr1 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr10 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr11 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr12 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr13 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr14 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr15 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr16 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr17 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr18 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr19 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr2 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr3 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr4 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr5 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr6 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr7 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr8 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chr9 Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chrMT Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chrX Last updated: Wed Jan 31 2007
ens_mouse_masked_NCBI34_chrY Last updated: Wed Jan 31 2007
ensembl_human_chr1 Last updated: Wed Jul 29 2009
ensembl_human_chr10 Last updated: Wed Jul 29 2009
ensembl_human_chr11 Last updated: Wed Jul 29 2009
ensembl_human_chr12 Last updated: Wed Jul 29 2009
ensembl_human_chr13 Last updated: Wed Jul 29 2009
ensembl_human_chr14 Last updated: Wed Jul 29 2009
ensembl_human_chr15 Last updated: Wed Jul 29 2009
ensembl_human_chr16 Last updated: Wed Jul 29 2009
ensembl_human_chr17 Last updated: Wed Jul 29 2009
ensembl_human_chr18 Last updated: Wed Jul 29 2009
ensembl_human_chr19 Last updated: Wed Jul 29 2009
ensembl_human_chr2 Last updated: Wed Jul 29 2009
ensembl_human_chr20 Last updated: Wed Jul 29 2009
ensembl_human_chr21 Last updated: Wed Jul 29 2009
ensembl_human_chr22 Last updated: Wed Jul 29 2009
ensembl_human_chr3 Last updated: Wed Jul 29 2009
ensembl_human_chr4 Last updated: Wed Jul 29 2009
ensembl_human_chr5 Last updated: Wed Jul 29 2009
ensembl_human_chr6 Last updated: Wed Jul 29 2009
ensembl_human_chr7 Last updated: Wed Jul 29 2009
ensembl_human_chr8 Last updated: Wed Jul 29 2009
ensembl_human_chr9 Last updated: Wed Jul 29 2009
ensembl_human_chrMT Last updated: Wed Jul 29 2009
ensembl_human_chrX Last updated: Wed Jul 29 2009
ensembl_human_chrY Last updated: Wed Jul 29 2009
ensembl_human_masked_chr1 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr10 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr11 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr12 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr13 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr14 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr15 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr16 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr17 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr18 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr19 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr2 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr20 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr21 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr22 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr3 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr4 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr5 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr6 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr7 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr8 Last updated: Wed Jul 29 2009
ensembl_human_masked_chr9 Last updated: Wed Jul 29 2009
ensembl_human_masked_chrMT Last updated: Wed Jul 29 2009
ensembl_human_masked_chrX Last updated: Wed Jul 29 2009
ensembl_human_masked_chrY Last updated: Wed Jul 29 2009
ensembl_mouse_chr1 Last updated: Fri Feb 19 2010
ensembl_mouse_chr10 Last updated: Fri Feb 19 2010
ensembl_mouse_chr11 Last updated: Fri Feb 19 2010
ensembl_mouse_chr12 Last updated: Fri Feb 19 2010
ensembl_mouse_chr13 Last updated: Fri Feb 19 2010
ensembl_mouse_chr14 Last updated: Fri Feb 19 2010
ensembl_mouse_chr15 Last updated: Fri Feb 19 2010
ensembl_mouse_chr16 Last updated: Fri Feb 19 2010
ensembl_mouse_chr17 Last updated: Fri Feb 19 2010
ensembl_mouse_chr18 Last updated: Fri Feb 19 2010
ensembl_mouse_chr19 Last updated: Fri Feb 19 2010
ensembl_mouse_chr2 Last updated: Fri Feb 19 2010
ensembl_mouse_chr3 Last updated: Fri Feb 19 2010
ensembl_mouse_chr4 Last updated: Fri Feb 19 2010
ensembl_mouse_chr5 Last updated: Fri Feb 19 2010
ensembl_mouse_chr6 Last updated: Fri Feb 19 2010
ensembl_mouse_chr7 Last updated: Fri Feb 19 2010
ensembl_mouse_chr8 Last updated: Fri Feb 19 2010
ensembl_mouse_chr9 Last updated: Fri Feb 19 2010
ensembl_mouse_chrMT Last updated: Fri Feb 19 2010
ensembl_mouse_chrX Last updated: Fri Feb 19 2010
ensembl_mouse_chrY Last updated: Fri Feb 19 2010
ensembl_mouse_masked_chr1 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr10 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr11 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr12 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr13 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr14 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr15 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr16 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr17 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr18 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr19 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr2 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr3 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr4 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr5 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr6 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr7 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr8 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chr9 Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chrMT Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chrX Last updated: Tue Feb 16 2010
ensembl_mouse_masked_chrY Last updated: Tue Feb 16 2010
ensembl_zebrafish_chr1 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr10 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr11 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr12 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr13 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr14 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr15 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr16 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr17 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr18 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr19 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr2 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr20 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr21 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr22 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr23 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr24 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr25 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr3 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr4 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr5 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr6 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr7 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr8 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chr9 Last updated: Sun Feb 21 2010
ensembl_zebrafish_chrMT Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr1 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr10 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr11 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr12 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr13 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr14 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr15 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr16 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr17 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr18 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr19 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr2 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr20 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr21 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr22 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr23 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr24 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr25 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr3 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr4 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr5 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr6 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr7 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr8 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chr9 Last updated: Sun Feb 21 2010
ensembl_zebrafish_masked_chrMT Last updated: Sun Feb 21 2010
gbrowse_mouse_runx_chr16 Last updated: Mon Oct 22 2007
gbrowse_runx_chr21 Last updated: Mon Oct 22 2007



These databases are also available to molbiol account holders via:

  • SRS
    • on the command line:getz -libs
    • using the SRS web interface

  • EMBOSS
    • on the command line:showdb


If you would like to use BLAST to search a database that is not currently available on Orac, then please send a request to Genmail

Search CBRG web site:
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This file last modified Monday February 22, 2010

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