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Analysis tools - BLAST search

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Basic Local Alignment Search Tool.

  - BLAST introduction
  - Run a BLAST search
  - blastall
  - BLAST-searchable databases
  - blastall formatting examples
  - creating BLAST databases (formatdb)
  - sequence filtering

BLAST Search options

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. Choose from the different types of BLAST search available below:


Nucleotide
  - Nucleotide-nucleotide BLAST (blastn)

Protein
  - Protein-protein BLAST (blastp)

Translated
  - Translated query vs. protein database (blastx)
  - Protein query vs. translated database (tblastn)
  - Translated query vs. translated database (tblastx)

Genomes
  - Human
  - Mouse
  - Zebrafish
  - Xenopus
  - All Refseq

GBrowse Databases
  - Human Gbrowse dbs

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This file last modified Tuesday October 26, 2010

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